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Section: Dissemination

Teaching

David Sherman and Natalia Golenetskaya teach :

  • Master : Web et Interfaces Homme-Machine, 50h, 2ème année Ingénieur, Enseirb-Matmeca (Institut Polytechnique de Bordeaux), Bordeaux

Tiphaine Martin teaches :

  • Master : Utilisation of EGEE GRID via virtual organisation GRISBI , 8h, niveau (M2), University Lyon, France

  • Master : Utilisation of EGEE GRID via virtual organisation GRISBI, 8h, niveau (M2), INRA Toulouse, France

  • Doctorat : Utilisation of MAGUS software, 8h, Génolevures Consortium, France

Tiphaine Martin has the supervision of 4 Bioinformatics MSc students from the University of Bordeaux:

  • Master : Development of search tools on Génolevures databases, 6hETC, M1, University Bordeaux 1 and University Bordeaux Segalen, France

Elisabeth Bon is Associate Professor in Bioinformatics and Genomics, and teaches undergraduate courses in computer sciences in regular STS (Sciences, Technologies & Sante) bachelor’s degrees and research oriented STS master’s degrees at the Life Sciences Department of the University Bordeaux Segalen (Medicine and Life Sciences schools) and University Bordeaux 1 (Computer and Life Science schools).

  • Licence : “Introduction to ICTs-Information & Communication Technologies” class (basic and advanced sections) , 112H00, niveau (L1, L2), the STS- biology variant Licence program, université, France

  • Licence : the national “IT and Internet certificate (C2i®), level 1”, 20h, niveau (L2, L3),the STS- biology variant Licence program, université, France

  • Master : “Bioinformatics: Computerised resources, data banks and methods”, 60h, niveau (M1),the Biology & Healthcare STS- Master program, co-listed with the University Bordeaux 1 (Sciences & Technologies) and the University Bordeaux Segalen (Medicine & Life Sciences), France

Elisabeth Bon is :

  • Licence : Responsible for the bachelor’s degree “Information Technologies & Internet advanced course”, Life Sciences Department, University Bordeaux, France

  • Licence : Responsible for the “IT and Internet certificate (C2i®), level 1”, Life Sciences Department, University Bordeaux , France

  • Licence : Current president (2005-2007; since sept. 2011) of the “Segalen Bordeaux University IT and Internet certificate (C2i, level 1) committee” in charge of the C2i evaluation and certification for students and continuous education interns, University Bordeaux Segalen, France

  • Master : Master Theses in Computer Science, speciality in BioInformatics: L. Bourgeade (2011-02-01 / 2011-08-31), Reconstitution in silico de l’histoire évolutive des pseudogènes chez les bactéries lactiques du genre Oenococcus, M2, University Bordeaux 1, France

  • Doctorat : Ph.D. Thesis in Computer Science: L. BOURGEADE (Since 2011-10-01) in cooperation with P. Ferraro and J. Allali at LaBRI, Filtres sur les arborescences modélisant les ARN et plasticité génique, University Bordeaux 1, France

  • Doctorat : ATER (assistant professor) in computer sciences for ITCs practical workshops and courses in the first year of the Bachelor’s degre, University Bordeaux 1, France

PhD & HdR :

  • PhD: Rodrigo Assar, Modeling and simulation of Hybrid Systems and Cell factory applications, University Bordeaux 1, defended 2011-10-26, David Sherman

  • PhD in progress: Nicolás Loira, University Bordeaux 1, Scaffold-based Reconstruction Method for Genome-Scale Metabolic Models, began 2007, David Sherman

  • PhD in progress: Natalia Golenetskaya, University Bordeaux 1, began 2009, Scaling out for data in comparative genomics, Pascal Durrens and David Sherman

  • PhD in progress : Razanne Issa, University Bordeaux 1, Analyse symbolique de données génomiques, began 2010, David Sherman

  • PhD in progress: Anna Zhukova, University Bordeaux 1, Comparative genomics of biotechnological organisms, began 2011, David Sherman

  • PhD in progress: Anasua Sarkar, University Bordeaux 1, began 2008, Macha Nikolski

  • PhD in progress: Laetitia Bourgeade, University Bordeaux 1, Filtres sur les arborescences modélisant les ARN et plasticité génique, began, Pascal Ferarro and Elisabeth Bon